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<title>MolTK C++ API: moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt; Struct Template Reference</title>

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<div class="title">moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt; Struct Template Reference</div>  </div>
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<!-- doxytag: class="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;" -->
<p>template specialization of DPTable for Affine alignment in large memory.  
 <a href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="DPTable_8hpp_source.html">DPTable.hpp</a>&gt;</code></p>
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Collaboration diagram for moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;:</div>
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<p><a href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4-members.html">List of all members.</a></p>
<table class="memberdecls">
<tr><td colspan="2"><h2><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structmoltk_1_1dp_1_1DPCell.html">DPCell</a>&lt; SCORE_TYPE, <br class="typebreak"/>
ALIGN_TYPE, 1 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a5d11d8cf9dfe39375d3e80e50c3788f4">CellType</a></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">typedef std::vector&lt; <a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a5d11d8cf9dfe39375d3e80e50c3788f4">CellType</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aed0a8969b07c42d57cdf1fc7cf80a1ee">RowType</a></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">typedef std::vector&lt; <a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aed0a8969b07c42d57cdf1fc7cf80a1ee">RowType</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a7d4e3dab063bd13056a7b952a8779231">TableType</a></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structmoltk_1_1dp_1_1AlignmentResult.html">AlignmentResult</a><br class="typebreak"/>
&lt; SCORE_TYPE &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aa9ae91f67a7f0e7f32be524106fcafc2">AlignmentResultType</a></td></tr>
<tr><td colspan="2"><h2><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#ae089f00ef3ddcb9e68ec7eea9532197c">~DPTable</a> ()</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a2a7e5308cf114962fc28069eac3bc255">clear_positions</a> ()</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a7030b83eb0d14d747161738c61c066db">allocate</a> ()</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a4d7434e959c1a7d1ac139afc2ae030bc">initialize</a> ()</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aedad0f68f7c4e5d3ea6ebbcba3850662">compute_recurrence</a> ()</td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aa9ae91f67a7f0e7f32be524106fcafc2">AlignmentResultType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#afa3f529f00fe88880b32116828027b95">compute_traceback</a> ()</td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aa9ae91f67a7f0e7f32be524106fcafc2">AlignmentResultType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a87b8f257e4325d3f4bab04d1d2497b2d">align</a> ()</td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="classmoltk_1_1Alignment__.html">moltk::Alignment_</a>&lt; SCORE_TYPE &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a21f347e4275f735f98a8999b989b3ba2">align</a> (const <a class="el" href="classmoltk_1_1Alignment__.html">moltk::Alignment_</a>&lt; SCORE_TYPE &gt; &amp;s1, const <a class="el" href="classmoltk_1_1Alignment__.html">moltk::Alignment_</a>&lt; SCORE_TYPE &gt; &amp;s2, const <a class="el" href="namespacemoltk.html#a29b017023af90d3aa2eb917cfdbc59ac">moltk::MatrixScorer</a> &amp;scorer)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#ae278b5e48764ad0ecd4b833ac52b4577">num_rows</a> () const </td></tr>
<tr><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#abb5e597dda753e8361ccaef2d5fa5aa8">num_columns</a> () const </td></tr>
<tr><td colspan="2"><h2><a name="pub-attribs"></a>
Public Attributes</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a7d4e3dab063bd13056a7b952a8779231">TableType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a0aaff051f5c99bf16b58f4fc75b8bdc5">table</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">Print out a summary of the positions and dynamic programming table for debugging.  <a href="#a0aaff051f5c99bf16b58f4fc75b8bdc5"></a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">std::vector&lt; DPPosition<br class="typebreak"/>
&lt; SCORE_TYPE, ALIGN_TYPE, 1 &gt; * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aedce8c28f14fc59d5bcfda67e8e6c6ca">query_positions</a></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">std::vector&lt; DPPosition<br class="typebreak"/>
&lt; SCORE_TYPE, ALIGN_TYPE, 1 &gt; * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a1bc69b4945577e1a2c8a8fa30af096a0">target_positions</a></td></tr>
</table>
<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><h3>template&lt;typename SCORE_TYPE, DPAlignGapping ALIGN_TYPE&gt;<br/>
struct moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;</h3>

<p>template specialization of DPTable for Affine alignment in large memory. </p>
</div><hr/><h2>Member Typedef Documentation</h2>
<a class="anchor" id="aa9ae91f67a7f0e7f32be524106fcafc2"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::AlignmentResultType" ref="aa9ae91f67a7f0e7f32be524106fcafc2" args="" -->
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<div class="memtemplate">
template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
      <table class="memname">
        <tr>
          <td class="memname">typedef <a class="el" href="structmoltk_1_1dp_1_1AlignmentResult.html">AlignmentResult</a>&lt;SCORE_TYPE&gt; moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::<a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aa9ae91f67a7f0e7f32be524106fcafc2">AlignmentResultType</a></td>
        </tr>
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<a class="anchor" id="a5d11d8cf9dfe39375d3e80e50c3788f4"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::CellType" ref="a5d11d8cf9dfe39375d3e80e50c3788f4" args="" -->
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<div class="memproto">
<div class="memtemplate">
template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
      <table class="memname">
        <tr>
          <td class="memname">typedef <a class="el" href="structmoltk_1_1dp_1_1DPCell.html">DPCell</a>&lt;SCORE_TYPE, ALIGN_TYPE, 1&gt; moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::<a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a5d11d8cf9dfe39375d3e80e50c3788f4">CellType</a></td>
        </tr>
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<a class="anchor" id="aed0a8969b07c42d57cdf1fc7cf80a1ee"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::RowType" ref="aed0a8969b07c42d57cdf1fc7cf80a1ee" args="" -->
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<div class="memproto">
<div class="memtemplate">
template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
      <table class="memname">
        <tr>
          <td class="memname">typedef std::vector&lt;<a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a5d11d8cf9dfe39375d3e80e50c3788f4">CellType</a>&gt; moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::<a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aed0a8969b07c42d57cdf1fc7cf80a1ee">RowType</a></td>
        </tr>
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<a class="anchor" id="a7d4e3dab063bd13056a7b952a8779231"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::TableType" ref="a7d4e3dab063bd13056a7b952a8779231" args="" -->
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<div class="memproto">
<div class="memtemplate">
template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
      <table class="memname">
        <tr>
          <td class="memname">typedef std::vector&lt;<a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aed0a8969b07c42d57cdf1fc7cf80a1ee">RowType</a>&gt; moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::<a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a7d4e3dab063bd13056a7b952a8779231">TableType</a></td>
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<hr/><h2>Constructor &amp; Destructor Documentation</h2>
<a class="anchor" id="ae089f00ef3ddcb9e68ec7eea9532197c"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::~DPTable" ref="ae089f00ef3ddcb9e68ec7eea9532197c" args="()" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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          <td class="memname">moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::~DPTable </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td><code> [inline]</code></td>
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<hr/><h2>Member Function Documentation</h2>
<a class="anchor" id="a87b8f257e4325d3f4bab04d1d2497b2d"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::align" ref="a87b8f257e4325d3f4bab04d1d2497b2d" args="()" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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          <td class="memname"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aa9ae91f67a7f0e7f32be524106fcafc2">AlignmentResultType</a> moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::align </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td><code> [inline]</code></td>
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<a class="anchor" id="a21f347e4275f735f98a8999b989b3ba2"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::align" ref="a21f347e4275f735f98a8999b989b3ba2" args="(const moltk::Alignment_&lt; SCORE_TYPE &gt; &amp;s1, const moltk::Alignment_&lt; SCORE_TYPE &gt; &amp;s2, const moltk::MatrixScorer &amp;scorer)" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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          <td class="memname"><a class="el" href="classmoltk_1_1Alignment__.html">moltk::Alignment_</a>&lt;SCORE_TYPE&gt; moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::align </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classmoltk_1_1Alignment__.html">moltk::Alignment_</a>&lt; SCORE_TYPE &gt; &amp;&#160;</td>
          <td class="paramname"><em>s1</em>, </td>
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        <tr>
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          <td></td>
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        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const <a class="el" href="namespacemoltk.html#a29b017023af90d3aa2eb917cfdbc59ac">moltk::MatrixScorer</a> &amp;&#160;</td>
          <td class="paramname"><em>scorer</em>&#160;</td>
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        <tr>
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          <td>)</td>
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<a class="anchor" id="a7030b83eb0d14d747161738c61c066db"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::allocate" ref="a7030b83eb0d14d747161738c61c066db" args="()" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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          <td class="memname">void moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::allocate </td>
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          <td class="paramname"></td><td>)</td>
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<a class="anchor" id="a2a7e5308cf114962fc28069eac3bc255"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::clear_positions" ref="a2a7e5308cf114962fc28069eac3bc255" args="()" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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          <td class="memname">void moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::clear_positions </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
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<a class="anchor" id="aedad0f68f7c4e5d3ea6ebbcba3850662"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::compute_recurrence" ref="aedad0f68f7c4e5d3ea6ebbcba3850662" args="()" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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<a class="anchor" id="afa3f529f00fe88880b32116828027b95"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::compute_traceback" ref="afa3f529f00fe88880b32116828027b95" args="()" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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<a class="anchor" id="a4d7434e959c1a7d1ac139afc2ae030bc"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::initialize" ref="a4d7434e959c1a7d1ac139afc2ae030bc" args="()" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td><code> [inline]</code></td>
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<a class="anchor" id="abb5e597dda753e8361ccaef2d5fa5aa8"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::num_columns" ref="abb5e597dda753e8361ccaef2d5fa5aa8" args="() const " -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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          <td class="memname">size_t moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::num_columns </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td> const<code> [inline]</code></td>
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<a class="anchor" id="ae278b5e48764ad0ecd4b833ac52b4577"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::num_rows" ref="ae278b5e48764ad0ecd4b833ac52b4577" args="() const " -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
      <table class="memname">
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          <td class="memname">size_t moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::num_rows </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td> const<code> [inline]</code></td>
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<hr/><h2>Member Data Documentation</h2>
<a class="anchor" id="aedce8c28f14fc59d5bcfda67e8e6c6ca"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::query_positions" ref="aedce8c28f14fc59d5bcfda67e8e6c6ca" args="" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
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          <td class="memname">std::vector&lt;DPPosition&lt;SCORE_TYPE, ALIGN_TYPE, 1&gt;*&gt; moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::<a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#aedce8c28f14fc59d5bcfda67e8e6c6ca">query_positions</a></td>
        </tr>
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</div>
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<a class="anchor" id="a0aaff051f5c99bf16b58f4fc75b8bdc5"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::table" ref="a0aaff051f5c99bf16b58f4fc75b8bdc5" args="" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a7d4e3dab063bd13056a7b952a8779231">TableType</a> moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::<a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a0aaff051f5c99bf16b58f4fc75b8bdc5">table</a></td>
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<p>Print out a summary of the positions and dynamic programming table for debugging. </p>
<p>Print out a summary of the dynamic programming table for debugging </p>

</div>
</div>
<a class="anchor" id="a1bc69b4945577e1a2c8a8fa30af096a0"></a><!-- doxytag: member="moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::target_positions" ref="a1bc69b4945577e1a2c8a8fa30af096a0" args="" -->
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template&lt;typename SCORE_TYPE , DPAlignGapping ALIGN_TYPE&gt; </div>
      <table class="memname">
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          <td class="memname">std::vector&lt;DPPosition&lt;SCORE_TYPE, ALIGN_TYPE, 1&gt;*&gt; moltk::dp::DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;::<a class="el" href="structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html#a1bc69b4945577e1a2c8a8fa30af096a0">target_positions</a></td>
        </tr>
      </table>
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</div>
</div>
<hr/>The documentation for this struct was generated from the following file:<ul>
<li>moltk/<a class="el" href="DPTable_8hpp_source.html">DPTable.hpp</a></li>
</ul>
</div>
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